J-E-J-S / pyminer

A Python CLI for Mining Scientific Literature.

Pyminer: A Python CLI for Mining Scientific Literature. 🔬⛏

Prerequisites:

• Python >=3.8
• Nodejs >=14.0

Quickstart:

pip install journal-miner

Usage:

Usage: pyminer [OPTIONS] QUERY

  Arguments:

  QUERY The main search string.

Options:
  -l, --limit INTEGER   Number of papers to mine. Default = 1000
  -kw, --keywords LIST  Keyword to mine.
  -v, --version         Show version number and exit.
  --help                Show this message and exit.

e.g.

pyminer 'RNA polymerase III' -kw inhibitor -kw 'TATA box' -kw enzyme -l 100

Output:

Output forms a .csv file that can be viewed in Excel. Papers are automatically ranked by score being the total keyword frequency but can also be ranked by individual keywords or date in Excel.