Jonathan Oribello's repositories
gl_dockerfiles
Dockerfiles created for my work at GeneLab
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biopython
Official git repository for Biopython (originally converted from CVS)
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GeneLab-Training
A repository for GeneLab Training documentation.
GPL-3.0000
Language:Jupyter Notebook000
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isa-api
ISA tools API
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multi-package-containers
Testing building mulled containers for multi-requirement tools.
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GPL-3.0000
RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
GPL-3.0000
schemastore
A collection of JSON schema files including full API
Language:JavaScriptApache-2.0000
singularity-gitpod
Example workspace full with Singularity
AGPL-3.0000
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spatialtranscriptomics
Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell RNA-seq data, designed for 10x genomics visium and single cell transcriptomics.
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test-datasets-extended
Test data to be used for automated testing with the pipelines
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webinarpipeline
Please don't break!!
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