IsaacLuo / SnapGeneFileReader

A Python project to read and write Snapgene *.dna into dict, json, and biopython object.

SnapGene Reader

SnapGene Reader is a Python library to parse Snapgene *.dna files into dictionnaries or Biopython SeqRecords:

from snapgene_reader import snapgene_file_to_dict, snapgene_file_to_seqrecord

file_path = './snap_gene_file.dna'
dictionnary = snapgene_file_to_dict(filepath)
seqrecord = snapgene_file_to_seqrecord(filepath)

Installation

Install with PIP:

pip install snapgene_reader

Test with Pytest:

python -m pytest
(or simply "pytest")

Licence = MIT

SnapGene Reader is an open-source software originally written by Isaac Luo at the Cai Lab. This fork is released on Github under the MIT licence (¢ Isaac Luo and Cai Lab) and maintained by the Edinburgh Genome Foundry. Everyone is welcome to contribute.