Giters
Illumina
/
paragraph
Graph realignment tools for structural variants
Geek Repo:
Geek Repo
Github PK Tool:
Github PK Tool
Stargazers:
145
Watchers:
20
Issues:
69
Forks:
28
Illumina/paragraph Issues
[BUG] Error adding alt from insertion sequence representing a duplication
Updated
2 months ago
Problem starting the script multigrmpy.py
Updated
4 months ago
Comments count
2
Format error in vcf line:
Updated
7 months ago
Comments count
3
Errors on idxdepth
Updated
7 months ago
Comments count
3
Distance between vcf position and chrom start is smaller than read length.
Closed
4 years ago
Comments count
2
Exception: Different padding base for REF and ALT
Updated
9 months ago
Comments count
6
Issue's with Native Build and Boost
Updated
10 months ago
idxdepth error
Closed
3 years ago
Comments count
3
Add support for VCFv4.2 breakend notation
Updated
a year ago
Error when working with `--ins-info-key`
Updated
a year ago
Comments count
1
idxdepth regex option not working
Closed
a year ago
Pysam error
Closed
3 years ago
Comments count
6
Genotyping for SNP
Updated
a year ago
Stop using Werror and Wall
Updated
2 years ago
Install paragraph
Updated
2 years ago
[E::idx_find_and_load] Could not retrieve index file
Updated
2 years ago
Comments count
7
no BGZF EOF marker
Updated
2 years ago
Missing key {ins_info_key} for <INS> at {self.chrom}:{vcf.pos};
Closed
4 years ago
Comments count
1
How to merge multi-samples SVs and obtain breakpoints for genotyping a population
Updated
2 years ago
subprocess.CalledProcessError
Closed
3 years ago
Comments count
2
index file
Updated
3 years ago
grmpy error: [E::cram_itr_query]
Updated
3 years ago
--vcf-split option with no description
Updated
3 years ago
Missing key SEQ for <INS>
Updated
3 years ago
Comments count
6
Error with idxdepth: "Assertion failed: _impl->header_contig_map.count(chr) != 0"
Updated
3 years ago
Comments count
1
Pysam error message after paragraph genotyping completes
Closed
3 years ago
Comments count
2
Handling of temporary files by multigrmpy.py
Closed
3 years ago
Comments count
2
Genotyping unresolved insertions using reads around the breakpoint
Closed
3 years ago
Comments count
1
Using more than one input VCF file
Closed
3 years ago
Comments count
1
How to better call and genotype population SVs?
Closed
3 years ago
Comments count
4
Compatibility of paragraph and Sniffles VCF
Closed
3 years ago
Comments count
4
error reference_sequence.empty
Closed
3 years ago
Comments count
6
Error processing an INV
Closed
3 years ago
Comments count
6
Make filter field for missing genotypes
Closed
3 years ago
ValueError: Invalid VariantRecord. Number of samples does not match header
Closed
3 years ago
Comments count
2
Can paragraph be used for indel from 2 bp to 30 bp?
Updated
3 years ago
Comments count
1
Which aligner?
Closed
4 years ago
Comments count
2
How to reuse variants converted from vcf to json for population genotyping?
Updated
4 years ago
Trouble genotyping lifted variants
Closed
4 years ago
Comments count
2
SV calling and genotyping across a population
Closed
4 years ago
Comments count
2
Errors when make
Closed
4 years ago
Comments count
2
Stripping END tag in INFO field
Closed
4 years ago
Comments count
3
Compatibility of paragraph and manta
Closed
4 years ago
Comments count
13
INS error
Closed
4 years ago
Comments count
6
How to prepare vcf file for Duplication & Tandem Duplication?
Closed
4 years ago
Comments count
3
idxdepth underestimating depth of coverage, possibly?
Closed
5 years ago
Comments count
2
multigrmpy.py: Illegal header name "depth sd"
Closed
5 years ago
Comments count
3
Latest docker image not working
Closed
5 years ago
Comments count
3
Illegal character in reference sequence (W base and possibly other noncanonical bases)
Closed
5 years ago
Comments count
2
Complex structural variants like TRA or INVDUP
Closed
5 years ago
Comments count
2
Previous
Next