Giters
Illumina
/
hap.py
Haplotype VCF comparison tools
Geek Repo:
Geek Repo
Github PK Tool:
Github PK Tool
Stargazers:
395
Watchers:
42
Issues:
168
Forks:
119
Illumina/hap.py Issues
Can't find reference
Updated
12 days ago
[E::bgzf_uncompress] inflate failed: invalid distance too far back
Updated
a month ago
Comments count
1
How is the false positive rate calculated in som.py stats?
Updated
2 months ago
Docker build failed
Updated
2 months ago
VCF Comparison with same file does not yield perfect result
Updated
2 months ago
Comments count
6
TRUTH.TOTAL differs despite having used the same TRUTH SET
Updated
3 months ago
Comments count
2
ROC and PR curve
Updated
6 months ago
Comments count
2
running into build error with CMake
Updated
7 months ago
Comments count
3
WES TI TV ratio
Closed
8 months ago
Comments count
2
Link provide in email is broken
Closed
9 months ago
Comments count
1
VCF format issues with --write-vcf, - FORMAT field inconsistencies
Updated
9 months ago
Comments count
1
Incorrect number of FORMAT/AD values on scmp-distance engine
Updated
9 months ago
Docker fails to build for both bases
Updated
9 months ago
Calculation of METRIC.Precision
Updated
9 months ago
Comments count
1
Hap.py not working with singularity
Updated
10 months ago
Comments count
1
Docker Implementation: Several Error Messages Related to "preprocess"
Closed
10 months ago
Comments count
1
error code 1
Closed
a year ago
Trying to print sequence when we mean contig name
Updated
a year ago
missing reference
Closed
a year ago
Comments count
1
Integrating vcfdist as a comparison engine into hap.py
Updated
a year ago
Error running BCFTOOLS :Argument list too long
Updated
a year ago
CMake Error at CMakeLists.txt:32 (message): Building external dependencies has failed
Closed
a year ago
Parsing results VCF gives different counts of TRUTH FN than summary
Updated
a year ago
Comments count
1
segmentation fault at gvcf2bed
Updated
a year ago
Comments count
5
pre.py -> vcfcheck fails due to call with invalid genotype (non-existent allele)
Updated
2 years ago
Confused with the interpretation when having TRUTH.FN and QUERY.FP
Updated
2 years ago
Comments count
2
The command given in introduction not working
Closed
3 years ago
Comments count
3
PreProcessing creates un-ordered VCF
Updated
2 years ago
Comments count
1
output_vcf
Updated
2 years ago
Comments count
1
Don't find the reference
Updated
2 years ago
Comments count
1
Failed to open or file not indexed:
Updated
2 years ago
Ubuntu 20 compatible or Python 3 Version
Updated
2 years ago
Comments count
1
how can i get filtered position?
Updated
2 years ago
Comments count
1
python 2.x Sunset, potential 3.x port?
Updated
2 years ago
Comments count
8
--version option not working on pre.py and hap.py
Updated
2 years ago
Bioconda Package Install Bug
Updated
2 years ago
Comments count
3
getting traceback while using '$python bin/hap.py'
Updated
3 years ago
Get something error in running the example.
Updated
3 years ago
Usage with different VCF callers
Updated
3 years ago
Comments count
1
FP in phased variant overlapping non-phased variant
Updated
3 years ago
Comments count
3
Getting Error on Docker-compose
Updated
3 years ago
How vary AF and DP for PR ROC?
Updated
3 years ago
Code Broken : Hap.py showing error on vcf files
Updated
3 years ago
Error: "Fasta file /opt/hap.py-data/hg19.fa is not indexed"
Closed
3 years ago
Comments count
2
hap.py version on dockerhub outdated
Updated
3 years ago
One of the preprocess jobs failed. Cannot query reference sequence
Closed
3 years ago
Comments count
1
0% TPs when comparing pepper & freebayes vcf files with yeast S228C ref
Closed
3 years ago
Comments count
5
Query.FP does not equal het +homalt or BD=FP
Updated
3 years ago
Installation issues in Centos7
Closed
4 years ago
Comments count
1
Different result with som.py/hap.py and just compare[chrom-pos-alt-ref] paire
Updated
4 years ago
Previous
Next