Giters
Illumina
/
ExpansionHunter
A tool for estimating repeat sizes
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Stargazers:
173
Watchers:
30
Issues:
111
Forks:
53
Illumina/ExpansionHunter Issues
Question on using bam by chr for EH analysis
Updated
3 months ago
Comments count
3
Variant_catalog.json: "VariantType":"SmallVariant" ERROR
Updated
4 months ago
Is locus structure really important?
Updated
4 months ago
getting Unrecognised option error while using "--min-locus-coverage" argument in ExpansionHunter v5.0.0
Updated
4 months ago
Comments count
5
Is there any active maintainer for this?
Updated
5 months ago
Comments count
3
Super long run time
Closed
5 months ago
SampleID input parameter
Updated
6 months ago
Comments count
2
SVTYPE missing from variant lines
Updated
6 months ago
Comments count
1
HOXA13 missing from the catalog file
Updated
6 months ago
Make step stops at 77% after completing 'Boost'
Updated
6 months ago
Comments count
2
Question about create variat
Updated
6 months ago
Comments count
2
miscounting repeat number
Updated
6 months ago
VCF header incomplete
Updated
7 months ago
Error loading locus locus_562: Flanks can contain at most 5 characters N but found 726 Ns
Updated
10 months ago
Comments count
2
Will not build with GCC 11
Updated
a year ago
Comments count
1
Error: ‘dummy’ may be used uninitialized
Updated
a year ago
Comments count
1
stoi error when running with large variant catalog
Updated
a year ago
Locus coverage vs number of supporting reads
Updated
a year ago
Exome Sequencing - Accuracy issues?
Updated
a year ago
Comments count
2
Building a custom VCF, Reference Region and Locus Structure
Updated
a year ago
Aborted runs 'std::logic_error'
Updated
a year ago
Scaling up runs into throttling/blocks from www.ebi.ac.uk
Updated
a year ago
Comments count
2
Longer repeats
Updated
a year ago
URL support
Updated
a year ago
ERROR "Illegal instruction (core dumped)"
Closed
a year ago
Request for Extra CIGAR string in bamlet
Updated
2 years ago
What does it mean when alternate allele is smaller than the reference?
Updated
2 years ago
Comments count
1
Is there a T2T version of Variant Catalog. json
Updated
2 years ago
Comments count
1
Help updating conda recipe
Updated
2 years ago
Discrepancy in results depending on the analysis mode chosen
Updated
2 years ago
error in installing dependencies - libcurl4
Closed
2 years ago
CAT interruption detection in ATN1
Updated
2 years ago
failed to read index in .cram file
Updated
2 years ago
question about VCF output
Updated
2 years ago
Add contig to the header of the generated VCF files
Updated
2 years ago
Wrong gene name in hg38/GRCh38 variant catalog
Updated
2 years ago
Interpreting results with one alternative allele
Updated
2 years ago
Comments count
3
Is it possible to count the reads of breakends of STR with EH outputs?
Updated
2 years ago
Comments count
8
bam which is separated by chromosome
Updated
3 years ago
Comments count
5
Genotype differences between versions
Updated
3 years ago
Comments count
1
Issue with bgzf_useek() in "Streaming Reads"
Updated
3 years ago
Comments count
1
No patch for step for 'abseil'
Updated
3 years ago
Comments count
3
Questions about how to set '--output prefix'
Closed
3 years ago
Comments count
5
Filtering reads by number of spanning reads
Updated
3 years ago
Comments count
1
Error compiling Expansion Hunter
Closed
3 years ago
Comments count
20
low depth results in WGS >40X
Closed
3 years ago
basic_string::substr: __pos (which is 18446744073709551587) > this->size() (which is 250)
Updated
3 years ago
Using different input bam files
Closed
3 years ago
Comments count
2
Is it possible to convert EHdn single sample STR profiles to EH variant catalog format?
Updated
3 years ago
Comments count
3
Error in installation (make command)
Closed
3 years ago
Comments count
2
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