ISGLOBAL-ICARIA's repositories
py_icaria_cohort_report
Cohort supervision and daily activity control
py_icaria_fw_redcap_alerts
Python script to setup alerts for ICARIA field workers. These alerts are for them to know if they have to do a household visit after AZi/Pbo administration or a Non-Compliant visit.
py_icaria_ghost_entries
To find ghost entries switches between ICARIA projects
py_icaria_migration
Python script to migrate ICARIA study participant records from one health facility to another.
py_icaria_pregmrs_redcap_alerts
Python script to setup alerts for PregMRS ICARIA field workers
py_icaria_quality
Python script to find inconsistencies on the ICARIA vaccination and intervention
py_icaria_rtss
Project to analyse and get RTS,S data on ICARIA trial
py_icaria_sae_reporting
Python script to manage different components of the reporting of Serious Adverse Events (SAEs) in the ICARIA Clinical Trial. These components are: (1) SAE numbering, etc.
r_icaria_duplicates
Script to check if there are any duplicate in any of the ICARIA REDCap projects.
r_icaria_etl
ETL for the ICARIA data sources.
r_icaria_non_compliants
This script analyses the reasons why the ICARIA participants become non-compliant.
r_icaria_non_returning_non_compliants
Script for generating a list of non-compliant ICARIA participants who are not coming back to the HF after the non-compliant contact.
r_icaria_progress_report
R Markdown report for describing the progress of the ICARIA Clinical Trial and ancillary studies.
r_icaria_random_list
R Script that checks whether the administered solution in the context of the ICARIA study was adequate or not according to the trial randomization list.
r_icaria_screening_log_ecrf_reconciliation
Produce a table showing the differences between the common indicators (e.g. number of participants who signed ICF) computed from both sources, the screening log and the eCRF.
r_icaria_verbal_autopsy
(1) Checks if there's any new verbal autopsy in the ODK server; (2) Extract and prepare the data for InterVA; (3) Execute InterVA for the new records; (4) Load/store the output CoD (with their corresponding probabilities) in REDCap for consultation.
py_icaria_mrs
Macrolide Resistance Control Evaluation script
py_icaria_reports
To generate internal reports for ICARIA purposes