IFenton

TritonDB

Creation of the Triton database of planktonic foraminifera

AlSabouniReproducibility

Code for the analysis in AlSabouni, Fenton et al (2018) JMicropal

coastalveg-edge-detection

Notebook demonstrating coastal vegetation edge detection from satellite imagery

connections-workshop-examples

Several scivision examples forked from the Alan Turing Institute's Research Engineering Group Connections Workshop (September 2022)

cryoEM-object-detection

A notebook demonstrating object detection in cryoEM micrographs

empiarreader

Reader for EMPIAR datasets

EoceneLDG

Code for the analysis in Fenton et al (2016) Phil Trans B

FentonRepeatability

Code for the analysis in Fenton et al (2018) JMicropal

ForamNiches

Code for quantifying thermal niche lability in planktonic foraminifera across glacial-interglacial cycles (Antell et al. 2021)

ForamsLDG

Code for the analysis in Fenton et al (2016) PLoS ONE

GeneralCode

Code created during my PhD / PostDoc for general purposes

jax-rnn

i teach myself rnns wohoooooooooooo

mapreader-plant-scivision

Example data for applying MapReader to classification of plant patches and running this model with the Scivision tool

odin

pixelflow

plankton-classification

Notebook demonstrating plankton images classification

plant-phenotyping-classification

scivision

scivision: a framework for scientific image analysis

scivision-basic-usage-examples

Example notebooks for the scivision project

scivision_classifier

scivision_huggingface

scivision_huggingface_objectdetection

scivision_huggingface_segmentation

scivision_sentinel2_stac

Scivision plugin for loading accessing Sentinel-2 Cloud-Optimized GeoTIFFs (following tutorial: https://odc-stac.readthedocs.io/en/latest/notebooks/stac-load-e84-aws.html)

software_carpentry

stardist-seed-pod

tree-crown-detection

Notebook demonstrating tree crown detection from drone imagery

VEdge_Detector_scivision

New version of original VEdge_Detector repository for integration with SciVision