International Clinics on Infectious Disease Dynamics and Data (ICI3D) Program

RTutorials

ICI3D R tutorials

ici3d-pkg

R package for DAIDD and MMED clinics

ICI3D.github.io

International Clinics on Infectious Disease Dynamics and Data (ICI3D) Program

Sandbox

ICI3D sandbox repository for learning Git

stochasticInvasion

trans_intervals

MMED 2021 project on transmission intervals

useclinic

Specialization of UseThis for ICI3D

.github

International Clinics on Infectious Disease Dynamics & Data (ICI3D)

CDC-Ebola-model

Reimplementation of the Meltzer model

Ebola

Public repository for Ebola collaboration code

ebola-forecast

LatexTemplates

lectureCode

Code to produce figures used in various lectures

SempaetalAJE-00426-2015

Code repository for Sempa et al. ('Reevaluating Cumulative HIV-1 viral load as a Prognostic Predictor: Predicting Opportunistic Infection Incidence and Mortality in a Ugandan cohort')

useclinicutils

Utilities for useclinic-generated packages

jekyll-theme-ici3d

Jekyll theme for ICI3D sites

modelTaxonomy_SI

Supplement for Pulliam et al. Compartmental Models for Infectious Disease Dynamics: a taxonomy