HussainiLab

BatchTINTV3

BatchTINTV3 is A GUI created by the Taub Institute in order to create an end-user friendly batch processing solution to complement Axona's new command line modification of TINT.

BinConverter

This is a GUI that will allow the user to convert the raw (.bin) files from Axona's Tint software to their normal Tint format. This will allow the user to retroactively choose a threshold.

hfoGUI

Python package designed to visualize Tint LFP data.

gebaSpike

A Python Spike Sorting Package designed to minimize time spent cleaning spikes in Tint.

neuroscikit-old

This is the main pipeline for data analysis in the Hussaini Lab.

Spatial_Spectral_Mapper

BinMSGUI

A Graphical User Interface that will convert the .bin data from Axona/Tint to .mda so it can be sorted by MountainSort, and then creates the appropriate sorted files.

BurstFit

Model discrete neuron firing rate data using a selection of modern regression techniques

ezTrack_GUI_Extension

IntanRHD2000USB

Custom RHD2000 USB software that includes a 24k Hz sampling frequency.

ml_ms4alg_snippets

This will contain the snippets version of the ml_ms4alg code.

PLOS-Biology-manuscript-data

Source data

getArenaParameters

hd_direction_testing

A test directory for sharing and debugging code pertaining to head direction.

hussaini-lab-to-nwb

Repository for the NWB conversion and processing codes for the Hussaini lab. Currently in development. To install, clone this git repo and do `pip install -e hussaini-lab-to-nwb`

intan_to_axona

This repository contains a script for converting Intan formatted electrophysiology data to downsampled axona format (eeg and egf).

IntanMSGUI

Graphical User Interface that will read Intan (.RHD) data, sort using MountainSort, and then create an output to Tint (the software we use to manually curate).

IntanRecordingController

A custom IntanRecordingController.exe to record electrophysiology data from an Intan Recording Controller.

ml_ephys

Electrophysiology tools, mountainlab processor library

ml_mask_out_artifacts

Mountainlab processor that will perform simple method of masking out large amplitude artifacts.

ml_ms4alg

MountainSort v4

mountainsort_examples

Examples of using MountainSort spike sorting software.

MountainSortWindows

Repository dedicated to code from a tutorial for using MountainSort with Windows 10 (using the WSL)

ms4_geoff_pipeline

This is a full custom MountainSort pipeline that I use to analyze data using the ms4 algorithm.

NeuroMaze

NSK-Backend

A fork of SignalStore for use as the NSK-Backend common repo.

NSK-isolated

Scripts from NeuroScikit 1.0

python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

wsl_terminal

This package allows you to execute commands in the WSL terminal via Python 3.