Hugo Guillen's repositories
refractiveindex.info-sqlite
SQLite wrapper for the refractiveindex.info database.
arff2pandas
Load an ARFF file as a pandas DataFrame.
genehtracker
Gene ID History Tracker
giggle-singularity
Tools for running GIGGLE on Singularity
HugoGuillen.github.io
Hugo's personal webpage
PaperSIPAIM
Notebook and features used for paper SIPAIM conference
bigwig
bigwig repository
blog_snippets
Supplementary code for blog entries
BrainRNACompartments
Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation
CASPR
CASPR pipeline.
CRIS.py
Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concurrently.
CRISPETA
A really flexible tool to obtain CRISPR paired gRNAs on desired regions of a genome
CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
giggle
Interval data structure
HPOworkbench
Human Phenotype Ontology Workbench
imorns
Supplementary information for the article "Accurate Classification of Immunomodulatory RNA Sequences" (IJCNN 2017 conference)
mageck-ibar
mageck-ibar is the analysis software for CRISPR/Cas9 with iBAR system applied library screening.
micro-course
Code for Informatics nano course
microbialcomposition
Supporting code
mimic3
A fast local neural text to speech engine for Mycroft
motif-clustering
Clustering motif models to remove redundancy
PMC-LLaMA
The official codes for "PMC-LLaMA: Continue Training LLaMA on Medical Papers"
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
REAP
RNAseq Expression Analysis Pipeline
reverseBed
Change relative strand orientation of a BED or GTF file
riboswitch2018
Datasets for "Classification of riboswitch sequences using k-mer frequencies"