HubBucket

arcs

🌈Scaffold genome sequence assemblies using linked read sequencing data

azure_arc

Automated Azure Arc environments

b3-basic-batchsize-benchmark

A quick benchmark with different batch sizes that prompted by the "Do Batch Sizes Actually Need to be Powers of 2?" article.

ConvNeXt

Code release for ConvNeXt model

genomescope

Fast genome analysis from unassembled short reads

lil-log

Lilian's Blog

ripgrep

ripgrep recursively searches directories for a regex pattern while respecting your gitignore

spark-1

Apache Spark - A unified analytics engine for large-scale data processing

sql-spark-connector

Apache Spark Connector for SQL Server and Azure SQL

torchhd

Torchhd is a Python library for Hyperdimensional Computing

vgp-assembly

VGP repository for the genome assembly working group

VINCE

VINCE is the Vulnerability Information and Coordination Environment developed and used by the CERT Coordination Center to improve coordinated vulnerability disclosure. VINCE is a Python-based web platform.

alevin-fry

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

applied-ml

📚 Papers & tech blogs by companies sharing their work on data science & machine learning in production.

bamtocov

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

EarlGrey

Earl Grey: A fully automated TE curation and annotation pipeline

flopp

flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.

git-cliff

A highly customizable Changelog Generator that follows Conventional Commit specifications ⛰️

linfa

A Rust machine learning framework.

mold

mold: A Modern Linker

nanoq

Minimal but speedy quality control for nanopore reads in Rust :bear:

orleans

Cloud Native application framework for .NET

Photonics-FDTD-DRL

Optimization and inverse design of photonic crystals using deep reinforcement learning

Polypolish

a short-read polishing tool for long-read assemblies

pulsar

Apache Pulsar - distributed pub-sub messaging system

rust-fmlrc

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

SC-300-Identity-and-Access-Administrator

sd

Intuitive find & replace CLI (sed alternative)

tokei

Count your code, quickly.