HubBucket Inc's repositories
b3-basic-batchsize-benchmark
A quick benchmark with different batch sizes that prompted by the "Do Batch Sizes Actually Need to be Powers of 2?" article.
genomescope
Fast genome analysis from unassembled short reads
sql-spark-connector
Apache Spark Connector for SQL Server and Azure SQL
vgp-assembly
VGP repository for the genome assembly working group
alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
applied-ml
📚 Papers & tech blogs by companies sharing their work on data science & machine learning in production.
EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
flopp
flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
git-cliff
A highly customizable Changelog Generator that follows Conventional Commit specifications ⛰️
linfa
A Rust machine learning framework.
mold
mold: A Modern Linker
nanoq
Minimal but speedy quality control for nanopore reads in Rust :bear:
orleans
Cloud Native application framework for .NET
Photonics-FDTD-DRL
Optimization and inverse design of photonic crystals using deep reinforcement learning
Polypolish
a short-read polishing tool for long-read assemblies
pulsar
Apache Pulsar - distributed pub-sub messaging system
rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
sd
Intuitive find & replace CLI (sed alternative)
tokei
Count your code, quickly.