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Huan Yang (Huan-Yang)

Huan-Yang

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Huan Yang's repositories

BioClients

Python package for access to online biomedical resources, usually via REST APIs.

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blotIt2

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bqplot

Plotting library for IPython/Jupyter Notebooks

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centrosome

An open source image processing library

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d2d

a modeling environment tailored to parameter estimation in dynamical systems

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dash

Interactive, reactive web apps in pure python :level_slider: :bar_chart:

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DiffEqParamEstim.jl

A component of the DiffEq ecosystem for parameter estimation

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dMod

Dynamic modeling and parameter estimation in R

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drawio-export

Export Draw.io diagrams using docker

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estimation_nociceptive_model

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ipywidgets

Interactive Widgets for the Jupyter Notebook

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MECAGEN

Simulation platform of animal embryogenesis

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miniconda_fitting

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mito-morphology-classification

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ndtest

multi-dimensional statistical test with python

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NuSeT

NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells

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odes

The ODES scikit for ordinary differential and algebraic equations, an extension to scipy

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PhysiBoSS

Multiscale simulation of multi-cellular system

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pycvodes

Python wrapper around cvodes (from the sundials library)

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PyDDE

PyDDE: Python/C DDE solver

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pyodesys

∫ Straightforward numerical integration of systems of ordinary differential equations

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pyPESTO

python Parameter EStimation TOolbox

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sendigR

Enable Cross-Study Analysis of 'CDISC' 'SEND' Datasets

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Tcellactivation_ODE_Immunity2020

Code needed for the modeling and fitting in Zenke et al, Immunity, 2020

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Waskom_PNAS_2017

Analysis code for Waskom and Wagner (2017) PNAS

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