Huaichao2018

cellcall

inferring cell-cell communication from scRNA-seq of ligand-receptor

blog

Build a Jekyll blog in minutes, without touching the command line.

rmini

A minimal R package with examples of most common components

tbsp

Trajectory Inference Based on SNP information.

UCSCXenaShiny

📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/

aRtsy

An R package for making generative art using 'ggplot2'.

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

celltypist

A tool for semi-automatic cell type annotation

cerebroApp

R package containing the Cerebro application.

cytoscape-tutorials

Collection of modular Cytoscape tutorials for online presentation using reveal.js

Datasets

Machine learning datasets used in tutorials on MachineLearningMastery.com

DEGs_Analysis_FDR

desktop-tutorial

GitHub Desktop tutorial repository

dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

ecotyper

GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

Huaichao2018

Config files for my GitHub profile.

IReNA

R package IReNA

metaICB

msigdb

MSigDB gene sets

mycobiome

Pan-cancer mycobiome atlas

NetMoss

NHS_R_Community_Intro_to_Docker

This is an introduction to deploying your apps on a Docker container, accessing it as an API and using the docker container

PhyloVelo

PhyloVelo, Phylogeny-based transcriptomic velocity of single cells

Scissor

Scissor package

scProportionTest

weekly

生信爱好者周刊（每周日发布）

Z3tt

🔗 Source code of my homepage build with {blogdown}, HUGO and Netlify