HsiaoYetGun / MiRLocator

miRNA subcellular localization

MiRLocator

Source code and the RNA embedding we used in Prediction of MicroRNA Subcellular Localization by Using a Sequence-to-Sequence Model (ICDM 2018).

Requirements

• Python>=2
• NumPy
• Scipy
• Pickle
• Dynet

Usage

Waiting for update ...

Results

Macro F	Micro F	Precision	Recall	Average Precision
49.33	58.20	50.33	48.49	57.96

Citation

Please cite this paper in your publications if it helps your research:

@INPROCEEDINGS{8594990, 
author={Y. Xiao and J. Cai and Y. Yang and H. Zhao and H. Shen}, 
booktitle={2018 IEEE International Conference on Data Mining (ICDM)}, 
title={Prediction of MicroRNA Subcellular Localization by Using a Sequence-to-Sequence Model}, 
year={2018}, 
volume={}, 
number={}, 
pages={1332-1337}, 
keywords={Conferences;Data mining;MicroRNA;Subcellular Localization;RNA2Vec;Sequence-to-Sequence}, 
doi={10.1109/ICDM.2018.00181}, 
ISSN={2374-8486}, 
month={Nov},}