Howiezhang226 / genotet

Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks

Genotet

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Development Build Status

An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks

Installation:

• Install node.js and JRE on your machine.

• Put the genotet folder to your server web directory, or your localhost web directory (e.g. xampp).

• Install required packages for the web pages.

  # at genotet/
  npm install

• Install required packages in the server folder.

  # at genotet/
  cd server
  # now at genotet/server
  npm install

• Create and edit a server configuration file to set the data paths. The file shall be located at genotet/server/config.

  networkPath = .../genotet_data/network/
  bindingPath = .../genotet_data/binding/
  expressionPath = .../genotet_data/expression/
  bigWigToWigPath = .../genotet_data/bigWigToWig
  uploadPath = .../genotet_data/upload/
  bedPath = .../genotet_data/bed/
  mappingPath = .../genotet_data/mapping/
  

• Run the setup script.

  bash setup.sh
  

• Run the server.

  node server/server.js