Infectious Disease Dynamics Group at Johns Hopkins University

ncov_incubation

Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools

nCoV-Sandbox

ForecastFramework

Create modular models. Quickly prototype models whose input includes (multiple) time series data. Create pieces of model use cases separately, and swap out particular models as desired. Create modeling competitions, data processing pipelines, and re-useable models.

geotargeting_ocv_ssa

The impact of geographic targeting of oral cholera vaccination in sub-Saharan Africa: a modeling study

cholera_burden_africa

singledose-ocv

Source Code and Data for 'The Impact of a One- versus Two-Dose Oral Cholera Vaccine Regimen in Outbreak Settings: A Modeling Study'

globaltoolbox

haiti_ocv_JHUmodel

JHU model for examining the effects of mass OCV campaigns in Haiti

minion-covid

MinION bioinformatics pipeline for un-targeted sequencing of SARS-CoV-2

arichpur_cholera_clustering

haiti_ocv

primary supplement materials for examining the effects of mass OCV campaigns in Haiti

rakaimigration

Code for Rakai Study on HIV and Migration Networks

cholera-ORS

Source Code and Data for 'Tracking Cholera through Surveillance of Oral Rehydration Solution Sales at Pharmacies: Insights from Urban Bangladesh'

covid-science-immuno

COVID19_Test

covidKutupalong

Diphtheria

Systematic review and reanalysis of diphtheria clinical and epidemiological aspects, including R0 and Vc.

EssentialPHServices

Supplementary materials and supporting information for https://doi.org/10.1177/0033354919890862

EventBasedEpidemicSimulation

ForecastFrameworkModels

package for installing models created using ForecastFramework

HIV-Incidence

Characterizing HIV incidence trends across subsaharan Africa

MeaslesCanonicalPath

Code and data related to the paper on the canonical to elimination.

ocv-VE-review

Data for Systematic Review and Meta-analysis of Oral Cholera Vaccine Efficacy and Effectivness

propvac

OCV Protection and Risk Tool

taxonomy-tools

ZikaLitReview

Data and analytic code for a literature review and pooled analysis aimed at estimating key values in the natural history of Zika virus.