Hoohm

chart.xkcd

xkcd styled chart lib

seurat-data

Dataset distribution for Seurat

materials

Devoxx4Kids Workshop Materials

AutoML_Survey

clustifyr

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

CleverCSV

CleverCSV is a Python package for handling messy CSV files. It provides a drop-in replacement for the builtin CSV module with improved dialect detection, and comes with a handy command line application for working with CSV files.

SummarizedBenchmark_Workflow

SummarizedBenchmark_Workflow is an R-based platform for automated benchmarking combinatorial pipelines.

liger

R package for integrating and analyzing multiple single-cell datasets

aletheia

Fight fake news with cryptography & human nature

captain-fact-extension

🔎 CaptainFact - Browser Extension. Displays facts on YouTube videos

captain-fact

📚 Documentation, wiki and community discussions

seuratv3wizard

A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3

t-SNE-Heatmaps

Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq

Drop-seq

Java tools for analyzing Drop-seq data

stir

STatistical Inference Relief

M3Drop

cellrouter

Reconstruction of complex single-cell trajectories using CellRouter

readit

[RETIRED] Effortlessly Read Any Rectangular Data Into R

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

zingeR

zero-inflated negative binomial gene expression in R

tximeta

Transcript quantification import with automatic metadata detection

style2paints

sketch + style = paints :art: (TOG2018/SIGGRAPH2018ASIA)

minsky

A systems dynamics economics modeling software

Fabrik

:factory: Collaboratively build, visualize, and design neural nets in browser

pufferfish

An efficient index for the colored, compacted, de Bruijn graph

tensorflow-generative-model-collections

Collection of generative models in Tensorflow

skpr

Generates and evaluates D, I, A, Alias, E, T, G, and custom optimal designs. Supports generation and evaluation of mixture and split/split-split/N-split plot designs. Includes parametric and Monte Carlo power evaluation functions. Provides a framework to evaluate power using functions provided in other packages or written by the user.

umap

Uniform Manifold Approximation and Projection

paperless

Scan, index, and archive all of your paper documents

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.