HenrikBengtsson / hsa

Non-Official Fork: Integrating Multi-Track Hi-C Data for Genome-Scale Reconstruction of 3D Chromatin Structure

hsa: A Non-Official R Package Version of hsa/cstruct1.R

This is an R package of the GPL-2 licensed R scripts provided by the authors of:

• Zou C, Zhang Y, Ouyang Z. HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure. Genome Biology, 2016, 17:40. PMC4774023

The code has been optimized for performance and memory usage, but has otherwise not been modified. Validation of numerical reproducibility has been done based on public data sets. See the R package tests for details.

Installation

The R package hsa is only available on GitHub. It can be installed in R using:

remotes::install_github("HenrikBengtsson/hsa")

This will install the package from source.