HelmholtzAI-consultants-HMGU

XAI-Tutorials

Self-explanatory tutorials for different model-agnostic and model-specific XAI methods

Quicksetup-ai

A flexible template, as a quick setup for deep learning projects in pytorch-lightning

Automatic-Cell-Counter

A GUI based on napari for counting cells automatically in cell migration experiments

fg-clustering

Explainability for Random Forest Models.

PySDDR

A python package for semi-structured deep distributional regression

Malis-Loss

Tensorflow and Pytorch Version of Malis Loss

oligo-designer-toolsuite

Develop custom oligo design pipelines.

napari-organoid-counter

A napari plugin for counting organoids from brightfield microscopy images with deep learning

data-centric-platform

A tool for all-kinds segmentation in microscopy imaging which encourages data centric approaches

Prompt-Engineering-LLMs-Course

ArtsyML

Code for blending people in images or videos with biological images using style transfer.

Echo2Pheno

A deep learning application to uncover echocardiographic phenotypes

EMcapsulins_segmentation

segmentation models for EMcapsulins segmentation

AURORA

WARNING: This code base is no longer supported. It still works, but we recommended using [BrainLes AURORA](https://github.com/BrainLesion/AURORA/) instead, which offers much more flexibility in a convenient PyPI package.

DimRed-Course

Material for the dimensionality reduction course

oligo-designer-toolsuite-AI-filters

AI plug-ins for the Oligo Designer Toolsuite package

DL-lecture-tutorials

Crash course on Introduction to AI and its medical applications. Tutorials with focus on intro to DL, overfitting, class imbalance.

automatedTesting

Colorectal-Cancer-Organoids-Detection

TODO

EffiDict

lightning-hydra-template

PyTorch Lightning + Hydra. A very user-friendly template for rapid, scalable and reproducible ML experimentation with best practices. ⚡🔥⚡

pytorch_fnet

A workflow for the generation of cell infection markers from brightfield microscopy images