Giters
Hekstra Lab (Hekstra-Lab)

Hekstra Lab

Hekstra-Lab

Geek Repo

GitHub of the Hekstra Lab. Note: Careless and Reciprocal Spaceship have migrated to https://github.com/rs-station

Location:Harvard University

Github PK Tool:Github PK Tool

Hekstra Lab's repositories

mdtools

Tools for running MD simulations in OpenMM

Language:PythonStargazers:6Issues:2Issues:2

SFcalculator

Stargazers:3Issues:3Issues:1

laue-index-assigner

A robust algorithm for assigning miller indices to Laue data from approximate indexing solutions.

Language:PythonStargazers:2Issues:3Issues:13

microutil

Python utils for working microscopy datasets

Language:PythonLicense:BSD-3-ClauseStargazers:2Issues:2Issues:12

napari-labeller

Language:PythonLicense:BSD-3-ClauseStargazers:2Issues:2Issues:1

EF-X-crystal-MD

Setup and analysis of MD simulations mimicking the application of an external electric field to a protein crystal.

Language:Jupyter NotebookStargazers:1Issues:3Issues:0

raman-analysis

Spontaneous Raman analysis library

Language:PythonLicense:NOASSERTIONStargazers:1Issues:1Issues:1

SFcalculator_torch

Differentiable pipeline connecting protein atomic models and crystallography structure factors

Language:PythonLicense:MITStargazers:1Issues:3Issues:3

UVScale

Language:PythonStargazers:1Issues:4Issues:0

Devices_Optics

Code to collect and analyze data using the spectroscopic setup & data collected

Language:Jupyter NotebookStargazers:0Issues:0Issues:0

disco

Generate feasible Laue Bragg spots from randomly oriented crystals

Language:PythonLicense:MITStargazers:0Issues:3Issues:0

marccd

Read, write, and manipulate diffraction images that use the MarCCD format

Language:PythonLicense:MITStargazers:0Issues:4Issues:0

SFcalculator_jax

Language:PythonLicense:MITStargazers:0Issues:0Issues:0

cog

Wrapper for Precognition to simplify Laue data reduction

Language:PythonStargazers:0Issues:0Issues:0

dw

jupyter notebooks exploring the double-Wilson model

Language:Jupyter NotebookLicense:MITStargazers:0Issues:4Issues:0

dw-examples

Examples of merging crystallographic intensities with a bivariate prior

Language:Jupyter NotebookStargazers:0Issues:3Issues:1

envs

conda environment repository

Language:PythonStargazers:0Issues:0Issues:0

fasrc-ood-jupyter

OnDemand app for serving Jupyter notebooks out of your local path

Language:HTMLLicense:MITStargazers:0Issues:3Issues:0

fast-overlap

meep meep

Language:PythonStargazers:0Issues:2Issues:2

hadamuxer

Demultiplex Hadamard-encoded diffraction images.

Language:PythonLicense:MITStargazers:0Issues:2Issues:0

hekstra-lab.github.io

Essentially a custom 404 in case anyone tries this URL

Language:HTMLStargazers:0Issues:4Issues:0

landfill

Machine learning tools to estimate spatiotemporally resolved background intentensities

Language:PythonLicense:MITStargazers:0Issues:4Issues:0

regroup

Determine new space groups for analyzing pump-probe crystallography experiments

Language:PythonLicense:MITStargazers:0Issues:3Issues:1

room-of-requirement

Useful Lab Utilities

Language:Jupyter NotebookStargazers:0Issues:4Issues:1

russell-thesis

Jupyter notebooks that were used for data analysis and figure making for John Russell's Ph.D. Thesis.

Language:Jupyter NotebookLicense:MITStargazers:0Issues:0Issues:0

scramble

A tool for disambiguating serial laue data

Language:PythonLicense:MITStargazers:0Issues:4Issues:0

SFcalculator_tf

Language:PythonLicense:MITStargazers:0Issues:3Issues:0

spectra-baseline

Fast implementations of baseline subtraction for raman spectra

Language:PythonLicense:NOASSERTIONStargazers:0Issues:3Issues:1

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

Language:PythonLicense:BSD-3-ClauseStargazers:0Issues:0Issues:0

yeast-mrcnn

Another implementation of mask-rcnn for detecting budding yeast cells in microscopy images

Language:PythonLicense:MITStargazers:0Issues:2Issues:3