HaploKit

HaploKit's repositories

vechat

Correcting errors in noisy long reads using variation graphs

Language:C++GPL-3.049 3 15

Strainline

Full-length de novo viral haplotype reconstruction from noisy long reads

Language:PythonGPL-3.017 2 12

DiseaseCapsule

Predicting the prevalence of complex genetic diseases from individual genotype profiles using capsule networks

Language:Jupyter NotebookGPL-3.01000

HERO

Hybrid error correction approach for long reads using overlap graph

Language:PythonMIT700

HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.

Language:C++MIT700

CrossHyLight

CrossHyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.

Language:C++MIT100

metagenome-asm

Enhancing long read based strain-aware metagenome assembly

Language:ShellGPL-3.0100

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT000

cxxgit

learning c/c++

Language:C++000

HaploKit.github.io

academic personal website

Language:JavaScriptMIT000

phasebook

Haplotype aware de novo assembly of diploid genome from long reads

Language:C++GPL-3.0000

StrainXpress

StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high complexity metagenome sequencing data at strain resolution.

Language:C++GPL-3.0000

whatshap

Read-based phasing of genomic variants, also called haplotype assembly

Language:C++MIT000