Hamidreza Ramezani (Hamidreza-Ramezani)

Hamidreza-Ramezani

Geek Repo

Company:University of British Columbia

Location:Vancouver, Canada

Home Page:https://hamidreza-ramezani.github.io/

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Hamidreza Ramezani's starred repositories

docker-bigdata-cluster

A collection of docker files and scripts to help build infrastructure for big data experiments

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canterbury-corpus

The Canterbury compression corpus as a git repository

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lz4

Extremely Fast Compression algorithm

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SilesiaCorpus

Silesia compression corpus

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lzbench

lzbench is an in-memory benchmark of open-source LZ77/LZSS/LZMA compressors

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aws-sdk-cpp

AWS SDK for C++

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snappy

A fast compressor/decompressor

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snappy-c

C port of the snappy compressor

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PIM-compression

General-purpose compression algorithms in memory

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PIM-Pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

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Shifted-Hamming-Distance

Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal paper (2015) by Xin et al. at http://users.ece.cmu.edu/~omutlu/pub/shifted-hamming-distance_bioinformatics15_proofs.pdf

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next.js

The React Framework

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alignment-in-memory

AIM (Alignment-in-Memory), A Framework for High-throughput Sequence Alignment using Real Processing-in-Memory Systems, Bioinformatics, btad155, https://doi.org/10.1093/bioinformatics/btad155

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zstd

Zstandard - Fast real-time compression algorithm

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strutil

Golang metrics for calculating string similarity and other string utility functions

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transpimlib

TransPimLib is a library for transcendental (and other hard-to-calculate) functions in general-purpose PIM systems, TransPimLib provides CORDIC-based and LUT-based methods for trigonometric functions, hyperbolic functions, exponentiation, logarithm, square root, etc. Described in ISPASS'23 paper by Item et al. (https://arxiv.org/pdf/2304.01951.pdf)

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lmbench

LMBench for ARC - based off of tarball from sourceforge, slightly modified for post-processing ease

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amazon-ec2-instance-selector

A CLI tool and go library which recommends instance types based on resource criteria like vcpus and memory

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ELBA

Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

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LOGAN

LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.

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gwfa

Proof-of-concept implementation of GWFA for sequence-to-graph alignment

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machine_learning_with_python_jadi

The notebooks we use on ML course

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checkstyle

Checkstyle is a development tool to help programmers write Java code that adheres to a coding standard. By default it supports the Google Java Style Guide and Sun Code Conventions, but is highly configurable. It can be invoked with an ANT task and a command line program.

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PrairieLearn

Online problem-driving learning system

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plantuml

Generate diagrams from textual description

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plantuml-parser

Convert the Java(or kotlin) source code to Plantuml

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