HadleyKing / OncoMX_BCO

OncoMX Conversion

Repo for tracking the conversion of OncoMX BCO db to 2791 complient objects.

Steps

1. Download most recent release of DB via URL:

• GlyGen: https://data.glygen.org/ln2releases/<VERSION>/jsondb/bcodb.json
  • 10:19:21:OncoMX_BCO:curl -o oncomx_bcodb.json 'https://data.oncomx.org/ln2releases/v-1.0.36/jsondb/bcodb.json'
• OncoMX: https://data.oncomx.org/ln2releases/<VERSION>/jsondb/bcodb.json

2. Run script sort_bocs.py

3. Run conversion script from the BCO Tool repo:

   python3 bcotool/bco_runner.py convert -b /path/to/directory/where/bcos/

   This will result in a group of converted BCOs that adhear to the IEEE standard.

4. Run the dataBCO_move.py script: