Jiheon's repositories
LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
DESeq2GO-Workflow
Workflow from DESeq2 to Gene ontology analysis using TopGO for non-model organisms
Language:R000
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GAPIT
Genome Association Predict Integrate Tools
Language:R000
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GWAS_Pipelines
Instructions and helpful R code for Running GEMMA and GAPIT
Language:R000
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LDkit
LDkit: a parallel computing toolkit for linkage disequilibrium analysis
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Language:Jupyter Notebook000
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PopLDdecay
PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
MIT000
Language:Jupyter Notebook000
scripts
Scripts for analysis used during the course
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SumTool
:hammer: Tool for GWAS summary-level data analysis
GPL-3.0000