NingLab

EXPERT

Transfer Learning-enabled context-aware microbial source tracking

ONN4MST

Ontology-aware neural network (ONN) for microbial community sample source tracking!

EXPERT-Disease-GGMP

Overcoming regional limitations: Transfer learning for cross-regional microbial-based diagnosis of diseases

metaPrism

Ultra-fast and highly accurate microbial community structure search utilizing dual-indexing and parallel computation

BGC-Prophet

DeepMicroCancer

DeepTaxa

DeepTaxa: a deep learning approach for ultra-fast classification of genomes

MetaSource

The source code and intermediate results of "Structure and function predictions of protein families by a microbiome-based targeted approach: decoding the link of microbiome niches with protein family homologous sequences"

straingems

straingems

DeepInverton

GAN-GMHI

Meta-Prism-2.0

Efficient microbial communities similarites calculation and comparison tool

MGM

MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.

ONN4ARG

ONN4ARG is an ontology-aware neural network model, which employs a novel ontology-aware layer for antibiotic resistance gene prediction and classification.

ASD-cancer

Biome-sorter

Biome-sorter: an Ontology-aware Neural Network enhanced auto sorter for microbial community sample without biome source information.

Correlation-Centric-Network

Source code for the research:"Correlation-Centric Network (CCN) representation for microbial co-occurrence patterns: new insights for microbial ecology "

Meta-Sorter

Improving biome labeling for tens of thousands of inaccurately annotated microbial community samples based on neural network and transfer learning

biome-species-function-relationship

COVID-19-CAM

Cohort Adaptive Model: CAM for COVID-19

DeepMicroFinder

DLMER-Bio

EXPERT-use-cases

Reproducible research, and functional show-cases for EXPERT.

HPC-Manual

This repo is created for a full explanation about how HPC servers are deployed and configured by administrators, also used as user manual for lab members.

microDELTA

Moutai-Catalog

Moutai-SME

The codes, mathematical equations and data sources involved in Moutai-SME project.

SAM

SAM (skin age model) is used to assess the skin state from the phenotypic and microbial perspectives.

Skin_paper_codes

TAT-dataset