HNUBioinformatics / LPLSG

LPLSG

• Predicting lncRNA-protein interactions based on network similarity

Requirements

• ues python 3.6.12
• numpy 1.19.2
• pandas 1.1.1
• scipy 1.5.2
• sklearn
• pytorch 1.4
• matplotlib 3.3.1

Data description

• 24_protein.xlsx: list of protein names.
• 982_lncRNaA.xlsx: list of lncRNA names.
• 4152_interaction.xlsx：proteins and lncRNAs association network.

Code description

• calcul_height_score.py: the protein set to obtain the highest score of the lncRNA set in the predicted results
• k_5_verifi.py: 5-k cross validation method involved in the experiment.

Result description

• pred_score_4152_lncRNA_protein.xlsx: The predicted scores of lncRNA and protein were calculated by LPLSG.
• predict_10_LPI.xlsx: The predicted scores of top 10 lncRNAs corresponding to proteins.

Supplementary materials.pdf

• Supporting materials involved in the article.

If you have any questions, please contact：

• [e-mail]