Hogune's repositories
awesome-cancer-variant-databases
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
awesome-nlp
:book: A curated list of resources dedicated to Natural Language Processing (NLP)
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BBB
Bioinformatics for Benched Biologists
benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
cheatsheets
RStudio Cheat Sheets
ColabFold
Making Protein folding accessible to all via Google Colab!
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
free-data-science-learning
resource
gatk4-somatic-snvs-indels
This repo is archived soon, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
github-slideshow
A robot powered training repository :robot:
hexo-theme-tranquilpeak
:lipstick: A gorgeous responsive theme for Hexo blog framework
metheor
Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments
mudcookies
We help each other to study single-cell data
notion-feeder
🕸 A Node app for creating a Feed Reader in Notion.
pml-book
"Probabilistic Machine Learning" - a book series by Kevin Murphy
pytorch_sphinx_theme
PyTorch Sphinx Theme for Korean Translation
reStructuredText-Documentation-Reference
Tutorial and reference for reStructuredText documentation.
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
single-cell-rna-seq
A single cell RNA-seq workflow following http://dx.doi.org/10.12688/f1000research.9501.2
single_cell_portal
Tutorials, workflows, and convenience scripts for Single Cell Portal
STARTRAC
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
vartrix
Single-Cell Genotyping Tool