Hogune's repositories

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

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awesome-nlp

:book: A curated list of resources dedicated to Natural Language Processing (NLP)

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awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

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BBB

Bioinformatics for Benched Biologists

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benchmarking-tools

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

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cheatsheets

RStudio Cheat Sheets

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ColabFold

Making Protein folding accessible to all via Google Colab!

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cyto_c

testing

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dbsnp

dbSNP

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excelerate-scRNAseq

Single RNA-seq data analysis with R (Finland, May, 2019)

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gatk4-somatic-snvs-indels

This repo is archived soon, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

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github-slideshow

A robot powered training repository :robot:

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hexo-theme-tranquilpeak

:lipstick: A gorgeous responsive theme for Hexo blog framework

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metheor

Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments

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mudcookies

We help each other to study single-cell data

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NLPython

This repository contains the code related to Natural Language Processing using python scripting language. All the codes are related to my book entitled "Python Natural Language Processing"

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notion-feeder

🕸 A Node app for creating a Feed Reader in Notion.

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pml-book

"Probabilistic Machine Learning" - a book series by Kevin Murphy

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pytorch_sphinx_theme

PyTorch Sphinx Theme for Korean Translation

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reStructuredText-Documentation-Reference

Tutorial and reference for reStructuredText documentation.

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rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

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scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

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single-cell-rna-seq

A single cell RNA-seq workflow following http://dx.doi.org/10.12688/f1000research.9501.2

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single_cell_portal

Tutorials, workflows, and convenience scripts for Single Cell Portal

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STARTRAC

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)

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vartrix

Single-Cell Genotyping Tool

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