In this repository, I am going to write simple R codes for visualizing genomics data.
It takes Gene Symbol as input and the output is a plot which shows transcripts, exons, introns, coding sites and other relevant information.
For example, you can see the result when the input is PUSL1 gene. It is obvious that this gene has been located in Chr1, it has three transcripts and you can see exons and coding sites for each transcripts (blue regions are exon and red regions are CDS).
The goal is extrcating similar regions between Human Chromosom 4 and Mouse Chromosoms 3, 5, 8. First, we are comparing chromosoms and atfer that coding sites have been compared.
