Gunjan Dixit's repositories
oshlack.github.io
Oshlack Lab website
training-collection
Collection of bioinformatics training materials
deeplearning-biology
A list of deep learning implementations in biology
ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
tutorial_dl_for_genomics
A short tutorial to using DL and keras for genomics with sequence data.
scATAC-benchmarking
Benchmarking computational single cell ATAC-seq methods
FIDDLE
Flexible Integration of Data with Deep LEarning
dragonn
A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
cnn-text-classification-tf
Convolutional Neural Network for Text Classification in Tensorflow
tensorflow-without-a-phd
A crash course in six episodes for software developers who want to become machine learning practitioners.
FactorNet
A deep learning package for predicting TF binding
tidy2019
Tidyverse workshop at BioinfoSummer 2019
dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
BUS_notebooks_R
R vignettes for processing BUS format single-cell RNA-seq files
docker-cheat-sheet
Docker Cheat Sheet
r4ds
R for data science
conquer_comparison
Code for evaluation of differential expression methods in single-cell RNA-seq data
r-docker-tutorial
A docker tutorial for reproducible research
bioinf545
ATAC-seq lab for BIOINF545
DEA.R
Script to automate differential expression analysis using DESeq2, edgeR or limma-voom
DeepNuc
Convolutional Neural Networks (CNN) for nucleotide sequences implemented in Tensorflow
msmbuilder
Statistical models for biomolecular dynamics
chipSeqTutorial
Tutorial on how to use MACS2 to explore ChIP-Seq data.
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
DeepLearningImplementations
Implementation of some deep learning models