The pipeline crashed with error message

Question

The pipeline crashed with error message

smarhon opened this issue 3 years ago · comments

smarhon · Answer 1 · Sat Dec 04 2021 03:47:21 GMT+0800 (China Standard Time)

I am trying to run the pipeline on the cluster, but the pipeline crashes with this error message. too-many-cells: /scratch/3950086: openTempFile: does not exist (No such file or directory). Does it mean the pipeline could not create temporary folder/file?

Gregory Schwartz · Answer 2 · Sat Dec 04 2021 05:45:46 GMT+0800 (China Standard Time)

It is likely that you do not have permission for the current $TMPDIR, try changing that variable in your shell or script to some other directory to store temporary files. Either permanently in your ~/.bashrc or temporarily: export TMPDIR=/path/to/a/directory/you/own.

smarhon · Answer 3 · Sat Dec 04 2021 11:33:12 GMT+0800 (China Standard Time)

Thanks! yes, that solved the problem. It was permission issue.