Graylab / IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

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google colab error

Samuel-gwb opened this issue · comments

Hi,
Just run the linked google colab ipynb without any modification, and got following error messages when rungining prediction, mainly refered to libstdc++.so.6: version `GLIBCXX_3.4.29' not found. I executed "!apt-get upgrade libstdc++6", however, same error still appeared.

Messages as:


ImportError Traceback (most recent call last)
in
4 sys.path.insert(0, f"/usr/local/lib/python{python_version}/site-packages/")
5
----> 6 from igfold.utils.visualize import *
7 from igfold import IgFoldRunner
8

12 frames
/usr/local/lib/python3.9/site-packages/pandas/core/window/ewm.py in
13
14 from pandas._libs.tslibs import Timedelta
---> 15 import pandas._libs.window.aggregations as window_aggregations
16 from pandas._typing import (
17 Axis,

ImportError: /lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /usr/local/lib/python3.9/site-packages/pandas/_libs/window/aggregations.cpython-39-x86_64-linux-gnu.so)


NOTE: If your import is failing due to a missing package, you can
manually install dependencies using either !pip or !apt.

To view examples of installing some common dependencies, click the
"Open Examples" button below.