Gray Lab

IgFold

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

IgLM

Generative Language Modeling for Antibody Design

GeoDock

Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

FLAb

Fitness landscapes for antibodies

AlphaRED

AlphaFold-initiated replica exchange protein docking

deepH3-distances-orientations

CAPSIF

CArbohydrate-Protein Site IdentiFier

MaskedProteinEnT

DeepSCAb

graylab_config

This repository serves as a storage space for lab-wide resources, such as shell aliases, useful scripts, etc. Please include a descriptive comment for everything you add to this repository.

Implicit-Membrane-Energy-Function-Benchmark

This is a set of scientific benchmark tests for evaluating membrane protein modeling energy functions. The test probe an energy function's ability to capture membrane protein orientation, stability, sequence, and structure. The methods are described in detail in the citations below.

MPDock

This repository contains the dataset of 29 transmembrane protein complexes of different rigidity along with their unbound protein structure. Additionally, there are scripts to submit relaxing and docking complexes given there unbound monomer structures.

dotfiles

A collection of dotfiles for syncing multiple computers