GlastonburyC

Dilated-U-net

coord-conv-pytorch

All convolution operators replaced with coordinate convolutions

RNAPath

Self-supervised representation learning combining GTEx histology, RNA-seq and WGS

DenseNet-Keras-implementation

What's the best error I can achieve on CIFAR10 using minimal parameters?

Adipocyte-U-net

Rapid GPU accelerated segmentation and counting of adipocytes from histology slides.

Nature_Conservancy_Kaggle_competition_entry

30th/2293 - Using Object detection and Deep convolutional neural networks to locate and classify 8 species of fish on fishing boats

TowardsDeepPhenotyping

Cdiscount-Kaggle-Competition

15 million images - 5000 multi-class classification task!

CellTypeDeconvolution

Cell type estimation in bulk Adipose tissue RNA-seq

CLR

CoordConv-pytorch

Pytorch implementation of CoordConv introduced in 'An intriguing failing of convolutional neural networks and the CoordConv solution' paper. (https://arxiv.org/pdf/1807.03247.pdf)

data-science-docker-vscode-template

DeepLearningImplementations

Implementation of recent Deep Learning papers

DSEA

Many trans-eQTLs can be phantom cis-eQTL effects driven by multimapping reads due to gene families, paralogues and regions of high sequence similarity across the genome.

FairUnsupervisedRepresentations

gradient_reversal_keras_tf

Keras implementation of a gradient reversal layer for the Tensorflow backend

Kaggle-Quora

Kaggle Quora Questions Pairs Competition (14th place solution)

keras_multi_gpu

Multi-GPU training for Keras

Kind_PyTorch_Tutorial

Kind PyTorch Tutorial for beginners

Machine-Learning

Machine learning algorithms

main

This is a repository of common helper functions that I have built for other projects.

ml-videos

A collection of video resources for machine learning

MOFA2

Multi-Omics Factor Analysis V2 (MOFA+)

multipy

Multiple hypothesis testing in Python

pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

PersonalGenomePipeline

Map all RNA-seq samples to reference and personal genomes using UK10K

pytorch-qrnn

PyTorch implementation of the Quasi-Recurrent Neural Network - up to 16 times faster than NVIDIA's cuDNN LSTM

retina-unet

Retina blood vessel segmentation with a convolutional neural network

scVI

Deep generative modeling for single-cell omics data

sp-society-camera-model-identification

IEEE's Signal Processing Society - Camera Model Identification Kaggle Competition