Amir Taheri-Ghahfarokhi's repositories
sgRNA_Annotator
An Excel-based tool to download the RefSeq genbank file for a given Human or Mouse gene and annotate CRISPR sgRNAs from literature.
NCBI_Batch_Download
Download and annotate the RefSeq for a large set of genomic coordinates using an Excel workbook.
ATG_CRISPR_Score_Calculator
This program takes three commandline arguments: (1) CFD scores for mismatches/bulges/PAMs (in a tab-delimted text file), (2) a crRNA sequence, and (3) a DNA sequence as input, processes and compares them, and outputs a calculated CFD score.
cas-offinder
An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
ghahfarokhi.github.io
Personal portfolio/resume webpage
htmltools-csv-to-datatable
Render any csv/tsv file into a responsive, sortable, and searchable HTML datatable without any server-side scripting. A url parameter will be used to point to the CSV file. It can be used as general purpose tool.