George Batchkala's repositories
kvasir-seg
[MediaEval Medico Challenge'2020]: Polyp Segmentation
TCGA-lung-histology-download
Downloading and Creating labels for the TCGA lung Whole Slide Images
simpsons-classification
Image Classification Coursework: Classifying Simpsons Over the Past 25 Years
ultrasound-nerve-segmentation
Undergraduate Research Project: "Ultrasound Nerve Segmentation" Kaggle Competition (2016)
moleculenet
MSc Dissertation: Estimating Uncertainty in Machine Learning Models for Drug Discovery
TCIA-CPTAC-lung-histology-download
Unofficial Instructions for downloading TCIA-CPTAC Pathology Images Lung Cohorts: LUAD, LSCC (aka LUSC)
active-data-enrichment
[MICCAI'2022] CaPTion workshop: Active Data Enrichment by Learning What to Annotate in Digital Pathology
arch-pre-training
ARCH pre-training: reproducing results from Multiple Instance Captioning: Learning Representations From Histopathology Textbooks and Articles
TCGA-lung-download-GD
Scripts for downloading WSI-TCGA-LUNG from Google Drive using gdown
AB-Testing
A/B Testing — A complete guide to statistical testing
AttentionDeepMIL
Implementation of Attention-based Deep Multiple Instance Learning in PyTorch
cocoapi
Multi-label Binary Classification on COCO Dataset @ http://cocodataset.org/
dependency-mil
[ISBI 2024] Accurate Subtyping of Lung Cancers by Modelling Class Dependencies
dsmil-wsi-public-fork
DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
engineering-class
Lightning Bits: Engineering for Researchers repo
introduction_to_ml_with_python
Notebooks and code for the book "Introduction to Machine Learning with Python". GeorgeBatch: scripts used while going through the book during summer 2018.
openai-cookbook
Examples and guides for using the OpenAI API
PythonIntro2020
This is an introductory Python course I am running for the 2019 Health and Data Science CDT at Oxford University.
PyTorch-StudioGAN
StudioGAN is a Pytorch library providing implementations of representative Generative Adversarial Networks (GANs) for conditional/unconditional image generation.
RadPathFusionLung
Repository contains code that allows the registration of histology slices and CT in the context of lung cancer.
super-gonorrhoea-pathogen-sequencing
A tutorial written for the University of Oxford DPhil in Healthcare Data Science
tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
tile-generation-scripts-andrea
Code from Andrea Chatrian for extracting patches/tiles from histology images.
UNI
Towards a general-purpose foundation model for computational pathology - Nature Medicine