GenevieveBuckley

distributed-skeleton-analysis

Distributed skeleton analysis with Dask

napari-big-data-training

slice-interpolation

Slice interpolation for label images

distributed

A distributed task scheduler for Dask

EM_Image_Segmentation

Deep Learning approaches for EM data

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

3DCT

broken-link-checker

Checking for broken links with lychee

CellProfiler

An open-source application for biological image analysis

cellprofiler-core

CNNectome

Scripts for building, training and validating CNNs for Connectomics

dask-examples

dask-labextension

JupyterLab extension for Dask

dask-tutorial

Dask tutorial

dask.github.io

Dask Website

fastdownload

Easily download, verify, and extract archives

hacking-dask

"Hacking Dask" tutorial materials

ITK

Insight Toolkit (ITK) -- Official Repository

itk-pickle-hacking

lma-2021-bioimage-analysis-python

"Bioimage analysis in Python" workshop at LMA2021

lychee-action

Github action to check for broken links in Markdown, HTML, and text files using lychee, a fast link checker written in Rust.

marketing

Resources and guidelines for marketing Dask

meeting-notes

Notes from weekly napari meetings

MIB2

Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microscopy datasets

napari-s3zarr

minimal plugin to pass open zarr stores on s3 in napari via dask

napari.github.io

tutorials for the napari image viewer

PHILOW

pooch

A friend to fetch your data files

skan

Python module to analyse skeleton (thin object) images

sparse

Sparse multi-dimensional arrays for the PyData ecosystem