Gimpute: An efficient genetic data processing and imputation pipeline
Development version from Github:
1.) Install Gimpute from the command line
git clone https://github.com/transbioZI/Gimpute
R CMD build Gimpute
R CMD INSTALL Gimpute_*.tar.gz
2.) Install Gimpute in R (Recommended)
install.packages("devtools")
library("devtools")
install_github("transbioZI/Gimpute", build_vignettes=TRUE)
Gimpute runs on any 64-bit x86 Linux distribution. Additional dependencies are described in the tutorial.
Please check Gimpute tutorial.
The best view of the tutorial is in HTML format with a table of contents by executing the following R codes after you have downloaded the tutorial (GimputeTutorial.Rmd in vignettes directory).
install.packages("rmarkdown")
library("rmarkdown")
render("GimputeTutorial.Rmd")
Chen, J., Lippold, D., Frank, J., Rayner, W., Meyer-Lindenberg, A., Schwarz, E., & Stegle, O. (2018). Gimpute: An efficient genetic data imputation pipeline. Bioinformatics.