GavinHuttley

gav_blog

Blog content of Gavin Huttley

tib

Topics in bioinformatics

pycogent

PyCogent: Official repository for software and unit tests

app_template

A template for creating cogent3 apps

c3test

for testing doc build to GH pages

cogent3

Comparative Genomics Toolkit 3

cogent3.github.io

Contents for cogent3.org

DemoProject

Initial project using click

DiverseSeq

Tools for analysis of sequence divergence

GraphBin

GraphBin: Refined binning of metagenomic contigs using assembly graphs

gutils

utilities for biol3157

scitrack

ConDiGA

🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics

ensembl_tui

A new approach to obtaining local copies of ensembl data

gbintk

🌟🧬 GraphBin-Tk: Assembly graph-based metagenomic binning toolkit

GraphBin2

☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

homologsampler

jupyter

Jupyter metapackage for installation, docs and chat

MetaCoAG

🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

metaDigitise

Digitising functions in R for extracting data and summary statistics from figures in primary research papers

MutationMotif

mutationorigin

MutVarMS

Quantifying influences on variance in mutation rate

nbgrader

A system for assigning and grading notebooks

piqtree2

a python library that exposes features from iqtree2 - efficient software for phylogenomic inference

rich

Rich is a Python library for rich text and beautiful formatting in the terminal.

sphinx-design

A sphinx extension for designing beautiful, screen-size responsive web components.

sphinx-navtree

Navigation tree customization for Sphinx

termtosvg

Record terminal sessions as SVG animations

VStrains

VStrains is a de novo approach for reconstructing strains from viral quasispecies.