Galithil

genologics_sql

Python interface for the Genologics Postgres database.

Gaffophone

Reddit bot that makes noise.

status

advent_of_code_2018

https://adventofcode.com/2018

charon

Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.

genologics

Python interface to the GenoLogics LIMS server via its REST API.

LIMS2DB

MultiQC_Clarity

MultiQC plugin interacting with the Illumina Genologics Clarity LIMS

covid_2021

django_2FA_example

django_graph-webapp

flowcell_parser

Collection of python scripts to parse Illumina Xten output

gali_uttt_bot

Galithil.github.io

git-rebase-squash-exercise

Git rebase and commit squashing exercise.

github-workflow-exercise

Exercise to practice collaborative GitHub workflow.

irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

ktane_python

lims_dashboard

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

NGI-RNAseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

NGI_dashboards

SciLifeLab NGI Dashboard Code

ngi_pipeline

Code driving the production pipeline at SciLifeLab (not yet in production)

scilifelab

Misc code snippets for Science For Life Laboratory

scilifelab_epps

A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

standalone_scripts

Repository to store standalone scripts that do not belong to any bigger package or repository

statusdb

Python wrappers and methods to work with CouchDB's instance at NGI Stockholm

TACA

Tool for the Automation of Cleanup and Analyses

tflearn

Deep learning library featuring a higher-level API for TensorFlow.

travis-testing