Gaius-Augustus

BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Augustus

Genome annotation with AUGUSTUS

GALBA

GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

TSEBRA

TSEBRA: Transcript Selector for BRAKER

MakeHub

Fully automated generation of UCSC assembly hubs

clamsa

ClaMSA (Classify Multiple Sequence Alignments).

VARUS

RNA-Seq sampling

learnMSA

Learning and Aligning Large Protein Families (MSA-HMM)

GUSHR

Generating UTRs from SHort Reads

GeometricHashing

Global, Highly Specific and Fast Filtering of Alignment Seeds

PeptImprove

Pipeline for fully automated prokaryotic genome annotation with peptide data from MS/MS experiments

pygustus

Python wrapper for AUGUSTUS.

taxonomy

Taxonomy database and related questions, e.g. closest taxon in a given set

tf_tcmc

Tensorflow Implementation for calculating graphical probabilistical models with edge transitions modelled by Time-reversible Continuous-time Markov Chains (TCMC).

AugustusDeveloperTest

Tests and Test Outputs for AUGUSTUS Development

TSEBRA-experiments

Documentation of the Experiments for the TSEBRA paper.

webaugustus