Gab0 / PMCrawl

tools to read and download articles from pubmed's PMC

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About

This is set of tools to:

  • search NCBI's pubmed articles through straight text queries,
  • get articles related to nucleotide polymorphisms found on target gene via dbSNP,
  • get articles contained inside a page (polymorphism or gene) on SNPedia,
  • view a summary of articles gathered on those searches.

Usage

Designed for Python 3;

$sudo pip install -r requirements.txt
$sudo pip install .


$pmcc "Tropical Diseases"    //search and view results on terminal
$pmcc "Aromatic Acids" -P    //same as above, also store results as a list of PMIDs

About

tools to read and download articles from pubmed's PMC

License:GNU General Public License v2.0


Languages

Language:Python 100.0%