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GSEA-MSigDB's repositories

GSEA_R

Updated implementation of the GSEA-P R application for modern R distributions

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Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).

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ssGSEA-gpmodule

A GenePattern module for running the ssGSEA method

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gsea-gpmodule

A GenePattern module for running the GSEA method

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chip2chip-gpmodule

A GenePattern module for running GSEA's Chip2Chip utility

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collapsedataset-gpmodule

A GenePattern module for running GSEA's CollapseDataset utility

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ensembl-genes

Extract the human ensembl gene catalog to simple tables

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gsea-leadingedgereport-gpmodule

A GenePattern module for running GSEA's LeadingEdge report creator

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gseapreranked-gpmodule

A GenePattern module for running the GSEA Preranked method

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msigdb-xml-browser

The MSigDB XML Browser is a free utility for exploring the MSigDB XML file.

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ssGSEAProjection-gpmodule

A GenePattern module for running the ssGSEAProjection method

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