Gian M. Franceschini's repositories
CALDER2
CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hierarchical organization and obtain sub-compartments; (3) compute nested sub-domains within each chromatin domain from short-range contacts.
Language:RMIT000
dataprivacy_bisulfite
Adaptation for bisulfite sequencing
Language:PythonGPL-3.0000
essHIC
essHIC is a python module to compare HiC matrices by computing a metric distance between them
Language:PythonMIT000
Language:R000
Rockermeth
A tool for discovering Differentially Methylated Regions