Beast code in Giters

GIS-SP-Group's starred repositories

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

CC-BY-4.0389 32 1

Table of software for the analysis of single-cell RNA-seq data.

Language:RMIT300 21 24

A comprehensive and long list of things a modern scientist is supposed to know

Unlicense287 25 14

Cluster single cells and analyze cell clade relationships with colorful visualizations.

Language:HaskellGPL-3.0102 3 51

An R-based interface for loom files

Language:R61 7 74

Software for exploration of gene expression data from single-cell RNA sequencing.

Language:C++MIT28 13 15

k nearest neighbor (KNN) graphs via Pearson correlation distance and local sensitive hashing (LSH).

Language:PythonMIT16 7 2

Docker/Singularity containers for high-throughput sequencing pipelines in the cloud and on the ground

Language:ShellMIT100