Frogee's repositories
PythonCAPI_testing
Trying to embed Python within C++
SorghumReconstructionAndPhenotyping
Program to reconstruct sorghum plants from depth images and make measurements of the reconstruction
proceduralGenerationPrototyping
Playing around with procedural generation
ANN_GA_prototype
Prototype for a recurrent artificial neural network that can be evolved by a genetic algorithm.
bwa
Burrow-Wheeler Aligner
emscripten
Emscripten: An LLVM-to-JavaScript Compiler
emscripten_experimentation
learning to use emscripten
exHet_Supplement
Example script and simulation data to use the Truong and McCormick et al. 2014 variable heterozygosity model.
fftw_testing
Learning how to use FFTW
gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
IGV
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
libfreenect2
Open source drivers for the Kinect for Windows v2 device
qtl
R/qtl: A QTL mapping environment
realtime-multiplayer-in-html5
Read the full article: http://buildnewgames.com/real-time-multiplayer/ An example using node.js, socket.io and HTML5 Canvas to explain and demonstrate realtime multiplayer games in the browser.
RIG
An implementation of the RIG workflow
SDL2_TigerJump
Playing with SDL2 to draw images to screen and take keyboard input
stacksToVCF
Obtain VCF from Stacks database
TE_stats
Python script(s) to calculate and plot transposable element annotations in GFF3 files, specifically generated by TEdenovo and TEannot outputs (Flutre et al., 2011; https://urgi.versailles.inra.fr/Tools/REPET)
wgsim
Reads simulator