Friederike Hanssen's repositories
airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
bioconda-recipes
Conda recipes for the bioconda channel.
bioicons
A library of free open source icons for science illustrations in biology and chemistry
clipseq
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
createpanelofnormals
Create panel of normals for Mutect2
dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
hicar
Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
intersectvcfs
Intersects Strelka2 and Mutect2 VCF files
mag
Assembly and binning of metagenomes
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nf-co.re
Code and files for the main nf-core website.
nf-wrap-main
Nextflow wrapper built around nf-core/modules
pipeline-docs
Docs for QBiC pipelines
proteinfold
Protein 3D structure prediction pipeline
r-project-template
R project template
rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
starship
☄🌌️ The minimal, blazing-fast, and infinitely customizable prompt for any shell!
test-datasets
Test data to be used for automated testing with the nf-core pipelines
tools-1
Python package with helper tools for the nf-core community.
viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples