FreshAirTonight af2complex Issues

FreshAirTonight/af2complex Issues

how can I create the input features for my own dataset by running the py. file? Is it possible to simply the input to only sequence of the protein?
Updated 2 months ago10
ValueError: could not broadcast input array from shape ** into shape **
Updated 2 months ago
run_alphafold.py kill when running big complex
Updated 7 months ago1
error on installing AF2complex on colab notebook
Updated 8 months ago6
[Question] GPU not utilized
Updated a year ago6
'scipy' has no attribute 'spatial'
Updated a year ago8
Code in example1.sh, example4.sh and examples.sh appears to be incomplete
Closed a year ago2
Error finding features
Closed a year ago2
Error with run_fea_gen.sh
Closed a year ago4
Getting low interaction scores with existing complexes
Updated a year ago1
Error when generating features with `feature_mode='multimer'`
Updated a year ago2
reduced_dbs
Updated a year ago1
help setting the env for alphafold
Updated 2 years ago1
iScore vs piTM-score vs interface score
Closed 2 years ago2
Is it possible to use a known structure (in pdb format) for feature generation and interactions prediction
Closed 2 years ago2
Enhanced interface score assessment
Updated 2 years ago1
Usage of structural templates
Closed 2 years ago2
How to recover the num of template to 20?
Closed 2 years ago1
the runtime of the procedure
Closed 2 years ago4
Interface clash indicator
Updated 2 years ago3
Can af2complex predict the impact of missense mutations on structure and interaction? and how to run af2complex in docker?
Updated 2 years ago1
Calculating the predicted interface TM-score and the interface score.
Closed 2 years ago2
AlphaFold2 Complex is not using the GPU
Closed 2 years ago2
Very low gpu utilization when running examples
Closed 2 years ago3
Specifying the GPU id on a machine with more than one gpu
Closed 3 years ago1

FreshAirTonight / af2complex

FreshAirTonight/af2complex Issues

how can I create the input features for my own dataset by running the py. file? Is it possible to simply the input to only sequence of the protein?

ValueError: could not broadcast input array from shape into shape

run_alphafold.py kill when running big complex

error on installing AF2complex on colab notebook

[Question] GPU not utilized

'scipy' has no attribute 'spatial'

Code in example1.sh, example4.sh and examples.sh appears to be incomplete

Error finding features

Error with run_fea_gen.sh

Getting low interaction scores with existing complexes

Error when generating features with `feature_mode='multimer'`

reduced_dbs

help setting the env for alphafold

iScore vs piTM-score vs interface score

Is it possible to use a known structure (in pdb format) for feature generation and interactions prediction

Enhanced interface score assessment

Usage of structural templates

How to recover the num of template to 20?

the runtime of the procedure

Interface clash indicator

Can af2complex predict the impact of missense mutations on structure and interaction? and how to run af2complex in docker?

Calculating the predicted interface TM-score and the interface score.

AlphaFold2 Complex is not using the GPU

Very low gpu utilization when running examples

Specifying the GPU id on a machine with more than one gpu