Francesco Costa's repositories
NERVE
NERVE is an user-friendly software environment for the in silico identification of the best vaccine candidates from whole proteomes of bacterial pathogens. The purpose of this project is to update it, implementing new modules with machine learning based methods, and improving the performance of the already implemented ones. Future directions of this work include the extensions to other type of proteomes.
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cell-counter
This is the implementation of an automated cell counting pipeline
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spaan
Python implementation of SPAAN, with expanded features (higher dimensional data are considered, but the features are the same as the original work).
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virulent_factor_classification
Attempt to build a model that compute the probability of a protein to be a virulent factor.
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