Franziska Bonath's repositories
standalone_scripts
Repository to store standalone scripts that do not belong to any bigger package or repository
basic_training
Hosts the content of the basic nf-core training on how to create nf-core pipelines with `nf-core create`
chipseq
Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.
crg-course-nov16
Nextflow + Docker tutorial material
flowcell_parser
Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
genomics-status
Tornado server for tracking samples at NGI Stockholm
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
HiC_QC
collection of scripts to analyse HiC data such as OmniC and MicroC from Dovetail
MosquitoRobots
Protocols and plates with plate definitions for SPT Mosquito robots
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nf-co.re
Files for the main nf-core website >>>
ngi_reports
Code to generate reports for use by the NGI in SciLifeLab
phased_primers_shiny
Shiny app to create phased PCR 1 primers for amplicon library preparation.
programming_formalism
CourseRepository for programming formalism course
TACA
Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm